@Slap
So I bought the car swapped at the end of November when I was at uni. I maybe had it running for a week, when I noticed the car start to run poorly. Had a long weekend coming up, so I decided to just bring it home. It was then the car died an hour from home which I then determined to be a charging issue. I bought this car fully knowing that the wiring was an absolute hack job and planned to re-do it when I had the time and money. Since i got it cheap, I figured the overall investment was pretty good, minus all the headaches of dealing with the previous owners "work" ?. I'm not sure what you are referencing when you mention the amp gauge. However I haven't cleaned the battery ground to the engine yet, it was in a very tight spot between the sub-frame. I was suspicious of that. Also, I need locate the ground strap for engine to body. I remember seeing it on the exhaust side on the engine, but now I don't see it, maybe it fell off, who knows haha. Here is my new suspicion. I know that the lower trans harness is from Wiring Specialties, it looks good but as @Duncanmentioned, it's possible the alternator is not properly connected. In fact, I don't believe that the P/O bought the right trans harness. There is difference in the harness between cars that had a factory automatic or were factory 5 speed cars. I am contacting Wiring Specialties for diagrams to confirm this. This should allow me to determine if its A) The alternator is improperly connected. B) The wrong harness C) Both. In the mean time, I am going to start doing more thorough detective work. Also, I'm planning on getting a full pro harness from Wiring Specialties, just because the old harness is in complete disrepair and will cause more long term cost and headache if it is not replaced.
This concludes my TED talk.
Johnny