firstly a BOV's job is to vent a back pressure wave from a suddenly closed throttle under boost say in a gear change. This wave returns towards the turbo through intercooler piping, and ofcourse the intercooler (if BOV is on turbo side of cooler).
Larger FMICs can resonate or echo the flutter sound which is by the way compressor surge, the very thing that BOVs are designed to prevent! The FMIC's effect upon sound is irrelevant, the problem is that you are experiencing compressor surge, or the flutter sound which is the pressure wave finding its way to the turbo. This means that BOV probably isn't venting enough air (or the timing or somthin along these lines), whether it be plumback or to atmosphere. Whether the BOV is plumback or to atmo is in terms of compressor surge, irrelevant also.
However, for RB25DET which has an airflow meter (AFM) a plumback BOV may work smoother under a range of conditions, because if BOV vents to atmos the computer assumes it has still received this air and may inject too much fuel in some conditions (and possibly stall).
Truth is flutter may sound alright but its compressor surge which will reduce throttle response when gas is applied after a gear change and reduce the life of a turbo. May work for ages but i think you may end up increasing turbo shaft play.
Hope this helps!