Dude spent well over 5 minutes with a flash light looking at the fuel rail, injectors, intake manifold, vacuum lines running to everything etc when I went through, though I had gone through with an engine swap that specifically mentioned "standard injection systems retained" on the application so he might have been a bit more anal.
If you can be f**ked taking the rail out painting the injectors stock colour is easy to do, just go visit a model shop and match the colour, cost you like $10 for a brush and some paint.
Assuming of course you have stock looking injectors and not something with adaptors sticking out all over the place.
With the AFM just peel the green sticker off a stock AFM and put it on there, easy as.