the pro ecus have more options to suit the engine they are intended for. the sport 2000 can be configured on anything. but without knock control or afm inputs
but the pro is limited to that engine but accepts factory afm as a tuning input if needed and knock sensors to alert you of knock via engine light and can be configured to retard timing.
i would recomend it. (just did a haltech seminar on the weekend) download the ecu manager software from haltech and you can see the differances by loading the base maps for both the pro and sport ecu,s once loaded f4 shows all the options availabe to use