Ii have just recieved an email back from a friend of mine, who happens to be the Michelin tyre engineer for one of the ALMS teams ( he has asked me not to say which one, but they did win one of the championships last year ) his response to this queston is that if you want the tyres to last, such as for use in the actual race, then do the slow heat cycle build up, and store the tyres for at least 24 hours, if they do not have a compound or construction change for the following race, then they bed thetyres in the previous races practice sessions and then store the tyres to allow them to totally cure.
However, for outright quickest laps out of a set of tyres, then go for the green tyres, a lap or two too scrub them and then do your flyers. This will give you the quickest results out of that set, but the heat load put into them will cook the tyre too quickly and they will only come back to about 80% of a properly bedded set.