Yep, in goes to the cooler piper and out goes to the actuator.
The source for the ebc can go anywhere that sees boost, if you have a spare bung on the intake manifold just use that, otherwise you'll need to cut a hose and use the T. The hose for the standard boost sensor would be my pick but you can use any except the FPR hose, dont touch that.
If the turbos still off the car then a quick flush cant hurt, run some water through the water lines and pour some oil through the oil lines, doesnt have to be new oil, just clean.