strictly speaking the PowerFC will run ok on an auto but at the cost of slightly harsher changes and a shortened life span.
the shift logic is inside the ECU, not in a separate unit, so there is a cost of going this way.
Dr-Drift (and others) is offering a programmable chip that solders onto the factory ECU, so this should be the easiest option although how well it all works is hard to say as it seems to be fairly new on R33 based ECU's (or at least they have not been used that commonly).
if you perform a seach in forced induction there are threads devoted to some options from PowerFC's, to these chips from DrDrift, to E-manage Ultimate.